[{id:1,values:[{One:"One",Two:"Two",Three:"Three"}]},{id:2,values:[{One:"One",Two:"Two",Four:"Four"}]},{id:3,values:[{One:"One",Three:"Three"}]},{id:4,values:[{One:"One",}]},{id:4,values:[{One:"One",Two:"Two",Four:"Four",Three:"Three"}]}]

db.collection.find({"values":{$elemMatch:{One:"One",Three:"Three"}}})