Database

[{"_id":ObjectId("607f7c67f64e993a5c9b9793"),"name":"Automatic Engineering","description":"this is the description.","created":ISODate("2021-04-21T01:14:15.736Z"),"subjects":[{"description":"dddd","name":"Transfer Function","_id":ObjectId("607f7c7af64e993a5c9b9794"),"created":ISODate("2021-04-21T01:14:34.943Z"),"courses":[{"description":"dddd","name":"conception","_id":ObjectId("607f7c9af64e993a5c9b9796"),"created":ISODate("2021-04-21T01:15:06.696Z"),"chapters":[{"description":"chapter 1","name":"Chapter 1","_id":ObjectId("607f7cb4f64e993a5c9b9798"),"created":ISODate("2021-04-21T01:15:32.855Z"),"topics":[{"description":"1","name":"Topic 1","_id":ObjectId("607f7ccef64e993a5c9b979b"),"created":ISODate("2021-04-21T01:15:58.064Z")},{"description":"2","name":"Topic 2","_id":ObjectId("607f7cd5f64e993a5c9b979c"),"created":ISODate("2021-04-21T01:16:05.663Z")},{"description":"3","name":"Topic 3","_id":ObjectId("607f7cdcf64e993a5c9b979d"),"created":ISODate("2021-04-21T01:16:12.336Z")}]},{"description":"chapter2","name":"Chapter 2","_id":ObjectId("607f7cbcf64e993a5c9b9799"),"created":ISODate("2021-04-21T01:15:40.231Z"),"topics":[]},{"description":"chapter 3","name":"Chapter 3","_id":ObjectId("607f7cc5f64e993a5c9b979a"),"created":ISODate("2021-04-21T01:15:49.000Z"),"topics":[]}]},{"description":"dddd","name":"exercise","_id":ObjectId("607f7ca6f64e993a5c9b9797"),"created":ISODate("2021-04-21T01:15:18.465Z"),"chapters":[]}]},{"description":"this is the example","name":"State Space Equation","_id":ObjectId("607f7c8ef64e993a5c9b9795"),"created":ISODate("2021-04-21T01:14:54.056Z"),"courses":[]}],}]

Query

db.collection.update({_id:ObjectId("607f7c67f64e993a5c9b9793")},{$pull:{"subjects.$[s].courses.$[c].chapters.$[ch].topics":{_id:ObjectId("607f7ccef64e993a5c9b979b")}}},{arrayFilters:[{"s._id":{$eq:ObjectId("607f7c7af64e993a5c9b9794")}},{"c._id":{$eq:ObjectId("607f7c9af64e993a5c9b9796")}},{"ch._id":{$eq:ObjectId("607f7cb4f64e993a5c9b9798")}}]})

Result