[{"_id":ObjectId("63a4347fae98474fa34764ef"),"topics":[{"id":"2","name":"Test1","owner":["123"]},{"id":"3","name":"Test2","owner":["123","456"]}]}]

db.collection.aggregate([{"$match":{"topics.owner":{"$in":["123","456"]}}},{"$project":{"topics":{"$filter":{"input":"$topics","as":"topic","cond":{$gt:[{$size:{$setIntersection:["$$topic.owner",["123","456"]]}},0]}}},"_id":0}}])