Database

[{_id:"top1",countries:[{"id":"country_1","cities":[{"id":"city_1","areas":[{"id":"1"},{"id":"2"},{"id":"3"},{"id":"5"}]},{"id":"city_2","areas":[{"id":"1"},{"id":"2"},{"id":"3"},{"id":"4"}]}]}]}]

Query

db.collection.aggregate([{"$addFields":{isDeliveringToArea:{$anyElementTrue:{$map:{input:"$countries",in:{$anyElementTrue:{$map:{input:"$$this.cities",in:{$in:["6","$$this.areas.id"]}}}}}}}}}])

Result